Enrichment Analysis (indra_cogex.client.enrichment)

A module for performing enrichment analysis with the INDRA COGEX service.

• Continuous Gene Enrichment Analysis (indra_cogex.client.enrichment.continuous)
• Discrete Gene Enrichment Analysis (indra_cogex.client.enrichment.discrete)
  • go_ora()
  • indra_downstream_ora()
  • indra_upstream_ora()
  • phenotype_ora()
  • reactome_ora()
  • wikipathways_ora()
• Signed Gene Enrichment Analysis (indra_cogex.client.enrichment.signed)
  • main()
  • reverse_causal_reasoning()
• Gene Enrichment Analysis Utilities (indra_cogex.client.enrichment.utils)
  • collect_gene_sets()
  • get_entity_to_regulators()
  • get_entity_to_targets()
  • get_go()
  • get_phenotype_gene_sets()
  • get_reactome()
  • get_wikipathways()