Bgee Processor (indra_cogex.sources.bgee)

Processor for Bgee.

class BgeeProcessor(path=None)

Bases: Processor

Processor for Bgee.

Initialize the Bgee processor.

Parameters:

path (Union[None, Path, str]) – The path to the Bgee dump pickle. If none given, will look in the default location.

get_nodes()

Iterate over the nodes to upload.

Return type:

Iterable[Node]

get_relations()

Iterate over the relations to upload.

Return type:

Iterable[Relation]