goa Processor (indra_cogex.sources.goa)

Processor for the Gene Ontology Associations (GOA) database.

class GoaProcessor[source]

Bases: Processor

Processor for the Gene Ontology Associations (GOA) database.

Initialize the GOA processor.

get_nodes()[source]

Iterate over the nodes to upload.

get_relations()[source]

Iterate over the relations to upload.

load_goa(url)[source]

Get the Gene Ontology Annotations database as a dataframe.

Parameters:

url (str) – The URL to the GOA database file.

Return type:

DataFrame

Returns:

The GOA database as a dataframe