Getting Started
indra_cogex.assembly
indra_cogex.sources.cli
indra_cogex.sources.processor
indra_cogex.sources.bgee
indra_cogex.sources.cbioportal
indra_cogex.sources.cellmarker
indra_cogex.sources.chembl
indra_cogex.sources.clinicaltrials
indra_cogex.sources.goa
GoaProcessor
load_goa()
indra_cogex.sources.indra_db
indra_cogex.sources.indra_ontology
indra_cogex.sources.interpro
indra_cogex.sources.odinson
indra_cogex.sources.pathways
indra_cogex.sources.pubmed
indra_cogex.sources.sider
indra_cogex.representation
Processor for the Gene Ontology Associations (GOA) database.
Bases: Processor
Processor
Initialize the GOA processor.
Iterate over the nodes to upload.
Iterate over the relations to upload.
Get the Gene Ontology Annotations database as a dataframe.
url (str) – The URL to the GOA database file.
str
DataFrame
The GOA database as a dataframe