CellMarker Processor (indra_cogex.sources.cellmarker)

Processor for the CellMarker database.

See also

• Website: http://xteam.xbio.top/CellMarker/

• Publication: https://doi.org/10.1093/nar/gky900

class CellMarkerProcessor(df=None)

Processor for the CellMarker database.

Initialize the CellMarker processor.

get_nodes()

Get cell, tissue, and gene nodes.

get_relations()

Iterate over the relations to upload.