Getting Started
indra_cogex.assembly
indra_cogex.sources.cli
indra_cogex.sources.processor
Processor
indra_cogex.sources.bgee
indra_cogex.sources.cbioportal
indra_cogex.sources.cellmarker
indra_cogex.sources.chembl
indra_cogex.sources.clinicaltrials
indra_cogex.sources.goa
indra_cogex.sources.indra_db
indra_cogex.sources.indra_ontology
indra_cogex.sources.interpro
indra_cogex.sources.odinson
indra_cogex.sources.pathways
indra_cogex.sources.pubmed
indra_cogex.sources.sider
indra_cogex.representation
Base classes for processors.
A processor creates nodes and iterables to upload to Neo4j.
Run the CLI for this processor.
None
Dump the contents of this processor to CSV files ready for use in neo4-admin import.
neo4-admin import
Tuple[Path, List[Node], Path]
Tuple
Path
List
Node
Get the CLI for this processor.
Command
Iterate over the nodes to upload.
Iterable[Node]
Iterable
Iterate over the relations to upload.
Iterable[Relation]
Relation