INDRA CoGEx Sources

• Source CLI (indra_cogex.sources.cli)
• INDRA CoGEx Sources Processor (indra_cogex.sources.processor)
  • Processor
    • Processor.cli()
    • Processor.dump()
    • Processor.get_cli()
    • Processor.get_nodes()
    • Processor.get_relations()
• Bgee Processor (indra_cogex.sources.bgee)
  • BgeeProcessor
    • BgeeProcessor.get_nodes()
    • BgeeProcessor.get_relations()
• cBioPortal Processor (indra_cogex.sources.cbioportal)
  • CcleCnaProcessor
    • CcleCnaProcessor.get_nodes()
    • CcleCnaProcessor.get_relations()
  • CcleDrugResponseProcessor
    • CcleDrugResponseProcessor.get_nodes()
    • CcleDrugResponseProcessor.get_relations()
  • CcleMutationsProcessor
    • CcleMutationsProcessor.get_nodes()
    • CcleMutationsProcessor.get_relations()
• CellMarker Processor (indra_cogex.sources.cellmarker)
  • CellMarkerProcessor
    • CellMarkerProcessor.get_nodes()
    • CellMarkerProcessor.get_relations()
• chembl Processor (indra_cogex.sources.chembl)
  • ChemblIndicationsProcessor
    • ChemblIndicationsProcessor.get_nodes()
    • ChemblIndicationsProcessor.get_relations()
  • MOLECULE_SQL
  • SQL
• clinicaltrials Processor (indra_cogex.sources.clinicaltrials)
  • ClinicaltrialsProcessor
    • ClinicaltrialsProcessor.get_nodes()
    • ClinicaltrialsProcessor.get_relations()
• goa Processor (indra_cogex.sources.goa)
  • GoaProcessor
    • GoaProcessor.get_nodes()
    • GoaProcessor.get_relations()
  • load_goa()
• INDRA DB Processor (indra_cogex.sources.indra_db)
  • DbProcessor
    • DbProcessor.get_nodes()
    • DbProcessor.get_relations()
  • EvidenceProcessor
    • EvidenceProcessor.get_nodes()
    • EvidenceProcessor.get_relations()
  • StatementJSONDecodeError
  • get_ag_ns_id()
• INDRA Ontology Processor (indra_cogex.sources.indra_ontology)
  • OntologyProcessor
    • OntologyProcessor.get_nodes()
    • OntologyProcessor.get_relations()
• InterPro Processor (indra_cogex.sources.interpro)
  • InterproProcessor
    • InterproProcessor.get_nodes()
    • InterproProcessor.get_relations()
• Odinson Processor (indra_cogex.sources.odinson)
  • Odinson Client (indra_cogex.sources.odinson.client)
  • Odinson Document (indra_cogex.sources.odinson.document)
  • Odinson Grammar (indra_cogex.sources.odinson.grammars)
• Pathways Processor (indra_cogex.sources.pathways)
• PubMed Processor (indra_cogex.sources.pubmed)
• Sider Processor (indra_cogex.sources.sider)