Getting Started
indra_cogex.assembly
indra_cogex.sources.cli
indra_cogex.sources.processor
indra_cogex.sources.bgee
indra_cogex.sources.cbioportal
indra_cogex.sources.cellmarker
indra_cogex.sources.chembl
indra_cogex.sources.clinicaltrials
indra_cogex.sources.goa
indra_cogex.sources.indra_db
indra_cogex.sources.indra_ontology
OntologyProcessor
indra_cogex.sources.interpro
indra_cogex.sources.odinson
indra_cogex.sources.pathways
indra_cogex.sources.pubmed
indra_cogex.sources.sider
indra_cogex.representation
Processor for the INDRA ontology.
Bases: Processor
Processor
Initialize the INDRA ontology processor.
ontology (Optional[IndraOntology]) – An instance of an INDRA ontology. If none, loads the INDRA bio_ontology.
Optional
IndraOntology
Iterate over the nodes to upload.
Iterate over the relations to upload.